The recitation sessions were conducted for the purpose of providing students with the tools needed to complete the course. The notes provided below are not intended to be complete or authoritative. Recitation notes are courtesy of Pouya Kheradpour, course TA. Used with permission.
Recitations files.| SES # | Topics |
|---|
| R1 | Running Times, Molecular Biology and Probability (PDF) |
| R2 | Python and Dynamic Programming and Alignments (PDF) |
| R3 | Randomization, Modulus, Hashing, Random Projections, BLAST, Suffix Trees (PDF) |
| R4 | Hidden Markov Models (PDF) |
| R5 | Motif Finding Using EM and Gibbs Sampling (PDF) |
| R6 | UPGMA, Neighbor Joining, Parsimony (PDF) |
| R7 | RNA Folding, Context Free Grammars and Related Algorithms (PDF) |
| R8 | Sequencing by Hybridization (PDF) |